{"id":75,"date":"2009-10-08T10:08:21","date_gmt":"2009-10-08T18:08:21","guid":{"rendered":"https:\/\/scitoys.com\/sciblog\/?p=75"},"modified":"2010-01-18T10:09:03","modified_gmt":"2010-01-18T18:09:03","slug":"round-it-goes","status":"publish","type":"post","link":"https:\/\/scitoys.com\/sciblog\/archives\/75","title":{"rendered":"Round it goes"},"content":{"rendered":"<p><img decoding=\"async\" src=\"..\/..\/attention\/cyclosporin.gif\" alt=\"\" \/><\/p>\n<p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/entrez\/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;list_uids=7691501&amp;dopt=Citation\" target=\"x\">Cyclosporin<\/a> is famous for its use in transplant surgery, where it suppresses the immune system to prevent rejection. It is made by the fungus <em>Tolypocladium inflatum<\/em> as a defensive weapon, as are many of our common antibiotics, such as penicillin.<\/p>\n<p>As you can see, it gets its name from its <a href=\"http:\/\/www.world-of-fungi.org\/Mostly_Medical\/Harriet_Upton\/Harriet_Upton.htm\" target=\"x\">chemical structure<\/a>.  It is made of eleven amino acids that form a closed loop.  Short chains of amino acids are called <em>peptides<\/em>, and longer ones are called proteins.<\/p>\n<p>Loops of amino acids (called <em>cyclic peptides<\/em>), have several features that make them especially interesting. Because they have no dangling ends for digestive enzymes to grab onto, they don&#8217;t degrade easily, and thus can be taken orally. They hold their shape better than non-cyclic peptides, making them more specific in their interactions, since they can&#8217;t deform to fit where they aren&#8217;t wanted (<a href=\"http:\/\/sunsite.wits.ac.za\/iupac\/publications\/pac\/1996\/pdf\/6806x1201.pdf\" target=\"x\">an important feature in biology<\/a>).  They can withstand higher temperatures and acidity, since they don&#8217;t break down as easily.  Proteins usually <em>denature<\/em> when heated, changing their structure dramatically, as in egg white when it is cooked. Cyclic peptides and proteins are much more stable.<\/p>\n<p>The stability of cyclic proteins can be further increased by linking the amino acids inside the loop together, forming ladder-like stuctures, webs, and knots.<\/p>\n<p>The stability and specificity of cyclic proteins makes them especially useful to organisms, as they can remain active in many environments, are difficult for a pathogen to degrade, and can target their activity to reduce side effects.<\/p>\n<p>One cyclic protein of interest is <em>rhesus theta-defensin-1<\/em>. It is a protein found in some primates which gives them a defense against HIV. Cyclic proteins have not yet been found in humans, but <a href=\"http:\/\/www.research.ucla.edu\/tech\/ucla01-329.htm\" target=\"x\">a genetic sequence similar to rhesus theta-defensin-1 has been found<\/a>, with a small mutation (a premature stop codon) that prevents it from forming the full protein. Analyzing this sequence in a range of different primates shows that the mutation occurred seven to ten million years ago. If it had not been for this mutation, humans might have retained <a href=\"http:\/\/www.aegis.com\/conferences\/croi\/2005\/313.html\" target=\"x\">a defense against HIV<\/a> to this day.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Cyclosporin is famous for its use in transplant surgery, where it suppresses the immune system to prevent rejection. It is made by the fungus Tolypocladium inflatum as a defensive weapon, as are many of our common antibiotics, such as penicillin. As you can see, it gets its name from its chemical structure. It is made [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[63,5,4,3],"tags":[87,85,89,88,86,41],"_links":{"self":[{"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/posts\/75"}],"collection":[{"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/comments?post=75"}],"version-history":[{"count":2,"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/posts\/75\/revisions"}],"predecessor-version":[{"id":77,"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/posts\/75\/revisions\/77"}],"wp:attachment":[{"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/media?parent=75"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/categories?post=75"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/scitoys.com\/sciblog\/wp-json\/wp\/v2\/tags?post=75"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}